Last updated: 2025-07-28

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Knit directory: Genomic-Selection-for-Drought-Tolerance-Using-Genome-Wide-SNPs-in-Casava/

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File Version Author Date Message
html 97fd0b9 Weverton Gomes 2025-01-07 update about.html, license.html, phenotype.html
html 02143bc Weverton Gomes 2023-10-27 add about, index and license html
Rmd 286b492 Weverton Gomes 2023-10-27 Update Scripts and README
html 90dc112 WevertonGomesCosta 2022-11-17 Update
html 6cc4d23 WevertonGomesCosta 2022-11-17 Update
html d930880 WevertonGomesCosta 2022-11-11 Update
Rmd 5988c27 WevertonGomesCosta 2022-11-11 Update
Rmd bf7b1d3 WevertonGomesCosta 2022-11-11 Update
html bf7b1d3 WevertonGomesCosta 2022-11-11 Update
Rmd b78c842 WevertonGomesCosta 2022-10-20 Start workflowr project.

This project aims to analyze the phenotypic data of Brazilian drought trials to evaluate the performance of various genotypes under drought conditions. The goal is to identify the genotypes that exhibit superior performance and resilience. The analysis follows a structured workflow, including data import and manipulation, exploratory data analysis, and genotype-environment analysis using mixed-effect models. This project details the estimation of Best Linear Unbiased Predictions (BLUPs) using mixed models, along with extensive Exploratory Data Analysis (EDA) and necessary manipulations to accurately estimate the BLUPs.


sessionInfo()
R version 4.4.1 (2024-06-14 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 11 x64 (build 26100)

Matrix products: default


locale:
[1] LC_COLLATE=Portuguese_Brazil.utf8  LC_CTYPE=Portuguese_Brazil.utf8   
[3] LC_MONETARY=Portuguese_Brazil.utf8 LC_NUMERIC=C                      
[5] LC_TIME=Portuguese_Brazil.utf8    

time zone: America/Sao_Paulo
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] vctrs_0.6.5       cli_3.6.5         knitr_1.50        rlang_1.1.6      
 [5] xfun_0.52         stringi_1.8.7     promises_1.3.3    jsonlite_2.0.0   
 [9] workflowr_1.7.1   glue_1.8.0        rprojroot_2.0.4   git2r_0.36.2     
[13] htmltools_0.5.8.1 httpuv_1.6.16     sass_0.4.10       rmarkdown_2.29   
[17] tibble_3.3.0      evaluate_1.0.4    jquerylib_0.1.4   fastmap_1.2.0    
[21] yaml_2.3.10       lifecycle_1.0.4   whisker_0.4.1     stringr_1.5.1    
[25] compiler_4.4.1    fs_1.6.6          pkgconfig_2.0.3   Rcpp_1.1.0       
[29] rstudioapi_0.17.1 later_1.4.2       digest_0.6.37     R6_2.6.1         
[33] pillar_1.11.0     magrittr_2.0.3    bslib_0.9.0       tools_4.4.1      
[37] cachem_1.1.0

  1. Weverton Gomes da Costa, Pós-Doutorando, Embrapa Mandioca e Fruticultura, ↩︎